Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs10983896 chr9:100596328 C/T 4.84E-8 183 13.03 21.07 2.67 KM Plot
ESCA rs10983904 chr9:100597532 A/C 4.84E-8 183 13.03 21.07 2.67 KM Plot
ESCA rs11057231 chr12:123764715 C/G 2.08E-7 182 13.1 19.6 2.7 KM Plot
ESCA rs11057289 chr12:123844097 G/A 1.73E-7 180 13.1 15.87 2.7 KM Plot
ESCA rs11064335 chr12:6841813 A/G 1.92E-8 182 12.93 20.5 1.57 KM Plot
ESCA rs11089117 chr21:45585289 G/A 4.66E-5 180 7.57 15.07 13.4 KM Plot
ESCA rs111239664 chr8:120879843 G/A 7.47E-6 183 12.87 18.58 3.6 KM Plot
ESCA rs111387165 chr8:120876036 G/GC 6.81E-6 184 12.87 18.57 3.6 KM Plot
ESCA rs111405302 chr11:118385691 T/C 4.58E-10 181 13.37 15.57 1.4 KM Plot
ESCA rs11142229 chr9:90918095 C/G 6.42E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs11142237 chr9:90923921 A/G 2.4E-5 184 3.47 13.38 13.37 KM Plot
ESCA rs111431582 chr7:111253622 C/A 0 183 13.35 14.5 0.8 KM Plot
ESCA rs111488882 chr12:123782803 ATTTCT/A 2.65E-7 183 13.03 18.9 2.7 KM Plot
ESCA rs111538549 chr7:111260374 C/A 0 183 13.35 14.5 0.8 KM Plot
ESCA rs111570600 chr8:120879872 T/C 7.65E-6 182 12.9 18.58 3.6 KM Plot